I ran GO Enrichment Analysis on the DE genes lists produced with the conditional cutoff (using logFC> |2| or logFC><0, depending on the amount of genes obtained with these cutoffs)

GO Plots

Comparisons vs intact

1dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


MF


3dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


6dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


9dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


12dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


15dpa-intact

Upregulated
BP


CC


MF


Downregulated
BP


CC


MF


21dpa-intact

Upregulated
BP


CC


MF


28dpa-intact

  • None ##### Upregulated
    ###### BP

CC


MF


Downregulated 
BP 


CC


MF


I think the comparisons intact to each of the regeneration phases is not going to be super useful, since there will be a tendendy to capture as upregulated the proliferation stuff and downregulated the vision stuff